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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_754191_754499_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
754191 - 754499
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACAGA
5'SS Class:
major
3'SS Sequence:
CTGTTGTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ACTTTCTGACTG
Flanking Amino Acid:
RAKGGGCECEEYYPNCEVVF
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
62.4
43.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
74.7
0.56
1
72.6
42.4
Minor 5ss
37
-1.5
3.2
49.1
46.7
Minor BPS
48.3
-0.2
1.8
53.66
42

Associated Gene:

Gene:
MTMR4
Ensembl Gene ID:
ENSAPLG00000012976
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013550
748549 - 781584
33036