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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_755078_758592_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
755078 - 758592
Intron Length:
3515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
ATTCATCCAGCT
Flanking Amino Acid:
SWKRIPVVVYRHVRNGAVIA
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
82.4
0.73
0.9
76.3
37.7
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
40.8
-0.6
2
62.43
41

Associated Gene:

Gene:
MTMR4
Ensembl Gene ID:
ENSAPLG00000012976
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013550
748549 - 781584
33036