About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_758707_765714_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
758707 - 765714
Intron Length:
7008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GAGTTCTCATCT
Flanking Amino Acid:
WRVSDINNNYKLCSSYPQKL
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
84.1
26.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
88.1
0.86
0.7
80.7
36.3
Minor 5ss
34.9
-1.7
3.4
49.4
41.3
Minor BPS
49.4
0.04
1.8
65.94
44.4

Associated Gene:

Gene:
MTMR4
Ensembl Gene ID:
ENSAPLG00000012976
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013550
748549 - 781584
33036