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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7588599_7589093_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7588599 - 7589093
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAA
U12 Branch Point Sequence:
ATATCCAAACAT
Flanking Amino Acid:
NKAGARPVANSCARDSRQIR
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.1
83.9
30.3
Major BPS
60.3
0.26
1.2
70.7
35.5
Major PPT
78.2
0.63
0.7
73.8
24.4
Minor 5ss
46.2
-0.4
2.8
66.9
44.4
Minor BPS
44
-0.3
2.2
65.68
44.2

Associated Gene:

Gene:
PIGL
Ensembl Gene ID:
ENSAPLG00000007459
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007740
7588016 - 7649355
61340