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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7648439_7649256_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7648439 - 7649256
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GTTTTTGTAATG
Flanking Amino Acid:
LTEEETERAKRAMRCHRSQL
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
82
0.72
0.8
74.3
36.5
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
52.3
-0
2
62.87
40.1

Associated Gene:

Gene:
PIGL
Ensembl Gene ID:
ENSAPLG00000007459
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019790
7588498 - 7649355
60858
ENSAPLT00000007740
7588016 - 7649355
61340