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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7652005_7652838_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7652005 - 7652838
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAGAAA
U12 Branch Point Sequence:
CTTTCTTTTACA
Flanking Amino Acid:
ASADLHVFNCNCSICTKKQN
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
46.6
-0.2
1.4
53.7
38.6
Major PPT
91.9
0.94
0.6
87.1
23.5
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
70.8
0.65
1.6
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007436
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007730
7650812 - 7654042
3231