About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_767384_767601_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
767384 - 767601
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCGTT
5'SS Class:
major
3'SS Sequence:
TTTGGGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATGATTTGCATT
Flanking Amino Acid:
HIVCKDSKVIRCHFSTFKQC
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
67.1
44.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
79.7
0.67
1
72.9
42.2
Minor 5ss
46.4
-0.4
3.6
72.7
44.5
Minor BPS
43.5
-0.4
1.8
58.9
39

Associated Gene:

Gene:
MTMR4
Ensembl Gene ID:
ENSAPLG00000012976
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013550
748549 - 781584
33036