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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7675511_7675837_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7675511 - 7675837
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATTCC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATAAA
U12 Branch Point Sequence:
CGTCCATAAACT
Flanking Amino Acid:
SKFLTNSEYTDAKTGKTCLM
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
69.1
36.7
Major BPS
53.7
0.09
1.1
55.9
35.8
Major PPT
78.8
0.65
0.9
74.3
36.5
Minor 5ss
39.4
-1.2
3.1
53.2
44.1
Minor BPS
51
0.11
2
71.56
44.7

Associated Gene:

Gene:
TRPV2
Ensembl Gene ID:
ENSAPLG00000007192
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040745
7672928 - 7680398
7471
ENSAPLT00000028306
7672928 - 7680398
7471
ENSAPLT00000025286
7674469 - 7682796
8328
ENSAPLT00000007485
7674469 - 7682796
8328
ENSAPLT00000041435
7675417 - 7681519
6103