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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7676850_7677349_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7676850 - 7677349
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTAATCTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCCCCTCTAACT
Flanking Amino Acid:
KKKEGVCFYFGELPLSLAAC
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
66.7
40.4
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
77.2
0.61
0.9
73.7
36.5
Minor 5ss
28.3
-2.5
2.7
29
37.1
Minor BPS
58.3
0.34
1.7
73.75
43.2

Associated Gene:

Gene:
TRPV2
Ensembl Gene ID:
ENSAPLG00000007192
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040745
7672928 - 7680398
7471
ENSAPLT00000028306
7672928 - 7680398
7471
ENSAPLT00000025286
7674469 - 7682796
8328
ENSAPLT00000007485
7674469 - 7682796
8328
ENSAPLT00000041435
7675417 - 7681519
6103