Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7678270_7678730_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7678270 - 7678730

Intron Length:

461

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGTGCT

5'SS Class:

major

3'SS Sequence:

TTTTTCCTCATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

TTTTCCTCATAG

Flanking Amino Acid:

EILAYSSDTPNRYKMVVLEP

Intron Amino Acid Position:

383

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.7

0.54

35.8

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

84.8

0.78

0.6

80.9

24.4

Minor 5ss

32.1

-2

3.3

47.2

42.3

Minor BPS

55.9

0.05

69.3

43.6

Associated Gene:

Gene:

TRPV2

Ensembl Gene ID:

ENSAPLG00000007192

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040745

7672928 - 7680398

7471

ENSAPLT00000028306

7672928 - 7680398

7471

ENSAPLT00000025286

7674469 - 7682796

8328

ENSAPLT00000007485

7674469 - 7682796

8328

ENSAPLT00000041435

7675417 - 7681519

6103