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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7678890_7679017_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7678890 - 7679017
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
IAYYQPLRVKPSFPVEFTAG
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90
0.9
0.7
85.2
29.1
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
TRPV2
Ensembl Gene ID:
ENSAPLG00000007192
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007485
7674469 - 7682796
8328
ENSAPLT00000040745
7672928 - 7680398
7471
ENSAPLT00000028306
7672928 - 7680398
7471