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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7678919_7680918_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7678919 - 7680918
Intron Length:
2000

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCCTGAATG
5'SS Class:
major
3'SS Sequence:
ATGTGAGATAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTGGTGATTT
Flanking Amino Acid:
KVSLVFFHLARMAFPSDLFQ
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
49.3
-0
1.2
45.9
44
Minor 5ss
28.3
-2.5
3.8
39.9
45.7
Minor BPS
41.1
-0.6
2.5
63.99
46.8

Associated Gene:

Gene:
TRPV2
Ensembl Gene ID:
ENSAPLG00000007192
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041435
7675417 - 7681519
6103