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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_768498_770989_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
768498 - 770989
Intron Length:
2492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
TGTGACCTAACT
Flanking Amino Acid:
ELVKEEESLQVPFTVLQGEG
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
81.7
0.71
0.8
72.8
37.4
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
56
0.27
2
78.85
42.7

Associated Gene:

Gene:
MTMR4
Ensembl Gene ID:
ENSAPLG00000012976
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013550
748549 - 781584
33036