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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7691674_7693020_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7691674 - 7693020
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGAAC
5'SS Class:
major
3'SS Sequence:
TCTTGTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGCCAC
U12 Branch Point Sequence:
TCTTGTTCCACA
Flanking Amino Acid:
VLQHSDGNKTMILVTSSTDK
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
75.1
34.7
Major BPS
43.9
-0.3
1.4
49.9
45.3
Major PPT
81.2
0.7
0.8
75.9
32.8
Minor 5ss
35
-1.7
3.3
47.5
41.6
Minor BPS
45.6
-0.3
2.3
62.68
44.2

Associated Gene:

Gene:
ITGAE
Ensembl Gene ID:
ENSAPLG00000006516
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006824
7688228 - 7718235
30008