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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7693119_7693505_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7693119 - 7693505
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTCC
5'SS Class:
major
3'SS Sequence:
CATTCAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GTTCATTCAATT
Flanking Amino Acid:
KIQCQEIPLQGKIKGSKNVQ
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
61
38.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.4
0.57
0.9
71.1
38.3
Minor 5ss
36.3
-1.6
3.5
51
45.8
Minor BPS
51.9
0.14
1.7
71.72
39.1

Associated Gene:

Gene:
ITGAE
Ensembl Gene ID:
ENSAPLG00000006516
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006824
7688228 - 7718235
30008