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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7693577_7694101_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7693577 - 7694101
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
GCCACCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTAGCC
Flanking Amino Acid:
AIDRNADWILACLQKKHRRA
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.2
35.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
61.9
0.27
0.9
53.2
31
Minor 5ss
29.7
-2.3
3.5
37.5
41.8
Minor BPS
63.7
0.41
1.9
76.92
38.6

Associated Gene:

Gene:
ITGAE
Ensembl Gene ID:
ENSAPLG00000006516
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006824
7688228 - 7718235
30008