Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7697019_7697481_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7697019 - 7697481

Intron Length:

463

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTAGG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTCCCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATGAAA

U12 Branch Point Sequence:

GAAACATGCAGT

Flanking Amino Acid:

MAKVKLYAPKIGEFVSNQWV

Intron Amino Acid Position:

335

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

77.8

38.7

Major BPS

57.6

0.19

1.3

67.9

36.3

Major PPT

80.1

0.68

0.7

73.7

31.4

Minor 5ss

29.7

-2.3

2.6

33.4

41.8

Minor BPS

36.9

-0.9

2.1

50.24

42.3

Associated Gene:

Gene:

ITGAE

Ensembl Gene ID:

ENSAPLG00000006516

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041563

7693506 - 7718235

24730

ENSAPLT00000006824

7688228 - 7718235

30008