Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7700882_7700964_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7700882 - 7700964

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTGCATTGTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

TTCTTTTGCATT

Flanking Amino Acid:

TLQQSIIGIEGTQGDALEYE

Intron Amino Acid Position:

611

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

71.3

40.5

Major BPS

0.62

1.4

85.7

34.9

Major PPT

74.8

0.56

73.9

40.7

Minor 5ss

38.1

-1.3

49.1

46.7

Minor BPS

1.9

71.39

40.7

Associated Gene:

Gene:

ITGAE

Ensembl Gene ID:

ENSAPLG00000006516

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006824

7688228 - 7718235

30008

ENSAPLT00000041563

7693506 - 7718235

24730