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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7705562_7706304_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7705562 - 7706304
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTAAT
5'SS Class:
major
3'SS Sequence:
CTCCACTGACTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
VGSLENVVVLRSRPVVHFLT
Intron Amino Acid Position:
887

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.3
37.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
57.5
0.17
1
50.9
37.7
Minor 5ss
36.5
-1.5
3.1
51.2
45.5
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
ITGAE
Ensembl Gene ID:
ENSAPLG00000006516
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041563
7693506 - 7718235
24730
ENSAPLT00000006824
7688228 - 7718235
30008