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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_771080_781513_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
771080 - 781513
Intron Length:
10434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTCTCTTAATG
Flanking Amino Acid:
MGEEGPPSLEY
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
73.3
0.52
1
67.2
42.9
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
75.7
0.67
1.2
76.4
35.1

Associated Gene:

Gene:
MTMR4
Ensembl Gene ID:
ENSAPLG00000012976
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013550
748549 - 781584
33036