Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7716166_7716276_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7716166 - 7716276

Intron Length:

111

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCCAG

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGACAT

U12 Branch Point Sequence:

CCGTGGTTGACA

Flanking Amino Acid:

RDYSNSTELEVTQDVKYQCV

Intron Amino Acid Position:

1263

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

64.9

42.8

Major BPS

67.6

0.44

1.2

Major PPT

78.3

0.64

0.8

32.5

Minor 5ss

31.8

-2.1

37.6

47.1

Minor BPS

44.1

-0.4

2.4

53.22

45.8

Associated Gene:

Gene:

ITGAE

Ensembl Gene ID:

ENSAPLG00000006516

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041563

7693506 - 7718235

24730

ENSAPLT00000006824

7688228 - 7718235

30008