Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7717694_7718154_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7717694 - 7718154

Intron Length:

461

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTATC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTCT

U12 Branch Point Sequence:

TGTTTTTTCTCT

Flanking Amino Acid:

LLFIILLLWKFGFFKRKYKI

Intron Amino Acid Position:

1366

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

81.3

32.8

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

92.8

0.96

0.6

92.6

17.4

Minor 5ss

33.5

-1.9

3.1

44.4

43.7

Minor BPS

43.1

-0.4

3.5

75.62

41.6

Associated Gene:

Gene:

ITGAE

Ensembl Gene ID:

ENSAPLG00000006516

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041563

7693506 - 7718235

24730

ENSAPLT00000006824

7688228 - 7718235

30008