About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7727546_7729816_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7727546 - 7729816
Intron Length:
2271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TGTTACTCACTA
Flanking Amino Acid:
VQLSILAYLVGWVFVVKKGY
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
82.5
37
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
82.8
0.74
0.9
77.1
37.1
Minor 5ss
37.8
-1.4
3.4
49.4
46.6
Minor BPS
48.9
-0
2
65.52
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006052
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006338
7727409 - 7738036
10628