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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7729968_7731045_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7729968 - 7731045
Intron Length:
1078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCATC
5'SS Class:
major
3'SS Sequence:
TTGTTTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTTCTGACCC
Flanking Amino Acid:
DVADYVIPPQGENVFFVMTN
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.2
68.3
42.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.3
0.7
0.8
74.7
40
Minor 5ss
38.9
-1.2
3.1
51.9
45
Minor BPS
58.6
0.25
1.8
71.67
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006052
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006338
7727409 - 7738036
10628