Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7735306_7736009_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7735306 - 7736009

Intron Length:

704

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTCCGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

ATGGAGTTAAAA

Flanking Amino Acid:

EKSISSGYNFRFAKYYRDAN

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.7

88.4

18.8

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

78.8

0.65

0.9

69.5

41.6

Minor 5ss

29.6

-2.3

2.6

32.7

42.2

Minor BPS

43.8

-0.4

2.3

55.81

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006052

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046197

7721634 - 7738036

16403

ENSAPLT00000006338

7727409 - 7738036

10628