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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7742519_7743591_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7742519 - 7743591
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGCGC
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTATTTTATCT
Flanking Amino Acid:
VPGQPVTAVVQRIEIHKLRQ
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
56.6
42.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.8
0.8
0.6
84.7
23
Minor 5ss
25.8
-2.8
3.1
29.7
37.2
Minor BPS
59.5
0.38
1.6
75.61
41.6

Associated Gene:

Gene:
TAX1BP3
Ensembl Gene ID:
ENSAPLG00000005954
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006167
7742027 - 7744483
2457