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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7744095_7744345_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7744095 - 7744345
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAGC
5'SS Class:
major
3'SS Sequence:
TGTGCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GCCTGCTGAAGC
Flanking Amino Acid:
GLQIGDKIMQVNGWDMTMVT
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
41.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
73.2
0.52
0.9
65.6
41
Minor 5ss
39.1
-1.2
3
52.1
44.7
Minor BPS
44.6
-0.4
2.1
51.35
45.6

Associated Gene:

Gene:
TAX1BP3
Ensembl Gene ID:
ENSAPLG00000005954
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006167
7742027 - 7744483
2457