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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7747047_7747395_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7747047 - 7747395
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTACTCATAACA
Flanking Amino Acid:
LQMFLQSYNNDEWKLIFGDP
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.1
45
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
75.7
0.58
1.1
72.2
42.7
Minor 5ss
34.5
-1.8
3.4
44.4
44.4
Minor BPS
63.4
0.42
1.6
74.79
35.8

Associated Gene:

Gene:
CTNS
Ensembl Gene ID:
ENSAPLG00000005710
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005943
7746916 - 7754337
7422