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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7748098_7749198_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7748098 - 7749198
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGTAT
U12 Branch Point Sequence:
ATATCTGTATTT
Flanking Amino Acid:
LIIIQCCIYERADQKVSKVV
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
52
0.05
1.4
52
43.5
Major PPT
83.9
0.76
0.9
81.3
35.7
Minor 5ss
44.9
-0.6
2.8
61.5
43.4
Minor BPS
48.4
-0
2.2
70.65
41

Associated Gene:

Gene:
CTNS
Ensembl Gene ID:
ENSAPLG00000005710
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005943
7746916 - 7754337
7422