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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7749509_7750266_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7749509 - 7750266
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCTTTTTTAAAA
Flanking Amino Acid:
PQLFENWRRKSVIGLSFDYI
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.3
0.77
0.7
77.7
31.1
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
64.8
0.46
1.4
68.55
37.9

Associated Gene:

Gene:
CTNS
Ensembl Gene ID:
ENSAPLG00000005710
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005943
7746916 - 7754337
7422