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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7750399_7751370_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7750399 - 7751370
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAAAC
5'SS Class:
major
3'SS Sequence:
CATTAACCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TCTGCATTAACC
Flanking Amino Acid:
YLYTSNSNLTGPRIQFQVIH
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
71.2
34.5
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
72.5
0.51
0.9
67.4
38.7
Minor 5ss
27.9
-2.5
2.8
26.6
36.4
Minor BPS
66.7
0.5
1.7
75.46
41.2

Associated Gene:

Gene:
CTNS
Ensembl Gene ID:
ENSAPLG00000005710
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005943
7746916 - 7754337
7422