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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7751475_7751564_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7751475 - 7751564
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAC
U12 Branch Point Sequence:
CTTCCTTCCACT
Flanking Amino Acid:
HNTIVELPGEVHLPAGHTEA
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
55.1
0.13
1.3
67.8
38.2
Major PPT
83.5
0.75
0.8
77.1
31.6
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
50
0.08
2
73.31
43.7

Associated Gene:

Gene:
CTNS
Ensembl Gene ID:
ENSAPLG00000005710
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005943
7746916 - 7754337
7422