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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7751650_7752876_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7751650 - 7752876
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
TATGTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
ACCAGTCTAACT
Flanking Amino Acid:
GSSTNVTISLRAPLNETLVI
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
83.3
0.75
0.9
77.3
36.6
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
44.6
-0.3
2
59.15
44.3

Associated Gene:

Gene:
CTNS
Ensembl Gene ID:
ENSAPLG00000005710
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005943
7746916 - 7754337
7422