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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7752956_7754218_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7752956 - 7754218
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
LLGPAGQLQSDGVIVLSVPE
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.9
31.6
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
84.6
0.78
0.8
77.2
36.6
Minor 5ss
32.2
-2
3.5
44.1
44.7
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
CTNS
Ensembl Gene ID:
ENSAPLG00000005710
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005943
7746916 - 7754337
7422