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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7755537_7757122_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7755537 - 7757122
Intron Length:
1586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGCTTCTTGATT
Flanking Amino Acid:
HTSSLEAGPQGMEQNVQRII
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.9
76.9
38.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
82.7
0.74
0.9
76.7
36.2
Minor 5ss
30.9
-2.2
3.6
46.8
48.5
Minor BPS
70.4
0.72
1.2
78.92
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005495
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005684
7755378 - 7764981
9604