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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7757265_7759821_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7757265 - 7759821
Intron Length:
2557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
GATTTCTCAGAT
Flanking Amino Acid:
HGIVFWKRDQGCRWTECGTS
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
86.8
0.83
0.9
84.6
36
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
48.5
-0
1.9
67.74
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005495
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005684
7755378 - 7764981
9604