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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7760006_7761231_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7760006 - 7761231
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTGT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTGTTTAAAA
Flanking Amino Acid:
CATVYWYLKNSPDFLKCYDA
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
72.3
40
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.8
0.51
1.1
75.7
37.3
Minor 5ss
40.2
-1.1
3.2
58.8
45.7
Minor BPS
66.9
0.53
1.8
80.33
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005495
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005684
7755378 - 7764981
9604