About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7766931_7767826_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7766931 - 7767826
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TGGTTCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
AACTGCTTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.2
33.4
Major BPS
73
0.57
1
73.6
28.6
Major PPT
75.3
0.57
0.9
68.9
37.2
Minor 5ss
45.4
-0.5
2.8
65.7
39.3
Minor BPS
49.5
0.05
2
66.95
44.3

Associated Gene:

Gene:
TRPV1
Ensembl Gene ID:
ENSAPLG00000004676
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026851
7766735 - 7776053
9319