Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7768143_7768689_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7768143 - 7768689

Intron Length:

547

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TTACCCTCGTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAC

U12 Branch Point Sequence:

CTGACTTTAACT

Flanking Amino Acid:

HANLERGKLHKLLSTDSITG

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

81.6

33.2

Major BPS

77.3

0.68

79.3

29.4

Major PPT

66.6

0.37

0.9

66.7

35.3

Minor 5ss

45.5

-0.5

2.8

58.6

40.2

Minor BPS

72.2

0.78

1.3

80.24

Associated Gene:

Gene:

TRPV1

Ensembl Gene ID:

ENSAPLG00000004676

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026851

7766735 - 7776053

9319

ENSAPLT00000004911

7767841 - 7777168

9328