Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7771534_7771761_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7771534 - 7771761

Intron Length:

228

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGTATG

5'SS Class:

major

3'SS Sequence:

TCCTTTCATTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TTCTCTTCATCC

Flanking Amino Acid:

EIIAYSSETPNRHEMLLVEP

Intron Amino Acid Position:

414

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

71.9

39.5

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

82.2

0.72

0.8

29.9

Minor 5ss

36.1

-1.6

2.9

48.1

41.6

Minor BPS

56.8

0.19

1.8

70.17

41.7

Associated Gene:

Gene:

TRPV1

Ensembl Gene ID:

ENSAPLG00000004676

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026851

7766735 - 7776053

9319

ENSAPLT00000004911

7767841 - 7777168

9328