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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7776156_7776364_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7776156 - 7776364
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACCTGC
5'SS Class:
major
3'SS Sequence:
GTTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
ATGCTTAGAATA
Flanking Amino Acid:
DGQDDYRWCFRVDEVNWSTW
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
64.1
43.4
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
77.9
0.63
0.8
69.6
36.7
Minor 5ss
49.7
-0
2.6
68.4
42.6
Minor BPS
44.6
-0.4
1.5
52.47
33.1

Associated Gene:

Gene:
TRPV1
Ensembl Gene ID:
ENSAPLG00000004676
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004911
7767841 - 7777168
9328