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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7803983_7804706_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7803983 - 7804706
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTAATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATTCTGTTAATG
Flanking Amino Acid:
QLAAKTGKLEVLKYILSREI
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
84.4
0.85
1
84
34.5
Major PPT
69.9
0.45
1
66.2
44.8
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
52
-0
2.1
62.57
39.8

Associated Gene:

Gene:
TRPV3
Ensembl Gene ID:
ENSAPLG00000004453
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004564
7795592 - 7810535
14944