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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7804884_7805962_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7804884 - 7805962
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
TTATTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TGTTCATTTATT
Flanking Amino Acid:
EIIVYNTNIGNRHEMLTLEP
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77
34.4
Major BPS
77.3
0.68
1
81.5
27
Major PPT
89
0.88
0.7
84.4
30.3
Minor 5ss
43.9
-0.7
2.9
59
45.5
Minor BPS
61.7
0.45
1.9
82.28
38.7

Associated Gene:

Gene:
TRPV3
Ensembl Gene ID:
ENSAPLG00000004453
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004564
7795592 - 7810535
14944