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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7806680_7807224_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7806680 - 7807224
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATCT
Flanking Amino Acid:
LGAIFLAIKESVAIFLLRPS
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.7
0.51
0.9
68.9
36.3
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
62.6
0.47
1.8
81.83
39.5

Associated Gene:

Gene:
TRPV3
Ensembl Gene ID:
ENSAPLG00000004453
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004564
7795592 - 7810535
14944