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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7808957_7809339_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7808957 - 7809339
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTAATTAAAA
Flanking Amino Acid:
YIVFLLGFGVALAALIETCQ
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.2
0.73
0.8
80.6
31.5
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
56
0.19
1.9
71.3
40.1

Associated Gene:

Gene:
TRPV3
Ensembl Gene ID:
ENSAPLG00000004453
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004564
7795592 - 7810535
14944