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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7809612_7810415_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7809612 - 7810415
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTTG
5'SS Class:
major
3'SS Sequence:
TTATTGTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTGTTAATA
Flanking Amino Acid:
KESEHIWKLQRARTILEFEK
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
72.6
39.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.4
0.53
1
70.1
40
Minor 5ss
46.3
-0.4
2.4
58.6
46
Minor BPS
62.5
0.39
2
75.44
36.3

Associated Gene:

Gene:
TRPV3
Ensembl Gene ID:
ENSAPLG00000004453
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004564
7795592 - 7810535
14944