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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7817773_7818788_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7817773 - 7818788
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
ACAATCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTGCATAACA
Flanking Amino Acid:
FTIQMFHYIKNALAPECCPV
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.4
0.35
0.9
57.7
37.6
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
62.3
0.38
2
78.97
37.1

Associated Gene:

Gene:
ASPA
Ensembl Gene ID:
ENSAPLG00000004419
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004539
7814479 - 7821711
7233