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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7818985_7821412_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7818985 - 7821412
Intron Length:
2428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTAATATTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTAATATTAACA
Flanking Amino Acid:
LNRVFDPDNLGRTVVEDIPY
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
80.8
33.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
68.1
0.41
1
62.5
42
Minor 5ss
36.6
-1.5
3
41.3
44.8
Minor BPS
56.8
0.21
1.7
65.91
40.1

Associated Gene:

Gene:
ASPA
Ensembl Gene ID:
ENSAPLG00000004419
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004539
7814479 - 7821711
7233