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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7826187_7826915_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7826187 - 7826915
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGTT
5'SS Class:
major
3'SS Sequence:
TTTTGATAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTTTGATAATT
Flanking Amino Acid:
LTSNPLKNETGWGTANPEGA
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
70
40.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
68.5
0.42
1
68.6
41.4
Minor 5ss
40.8
-1
3.7
64.9
46.4
Minor BPS
49.7
0.05
2.3
75.84
41.6

Associated Gene:

Gene:
SPATA22
Ensembl Gene ID:
ENSAPLG00000004418
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004529
7825651 - 7830310
4660