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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_7828794_7829635_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7828794 - 7829635
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTATATGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGATGTTTACAT
Flanking Amino Acid:
YKTALLFEVLGTLDSAVTSG
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
71.3
0.48
1
65.7
40.4
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
47.1
-0.1
2.1
66.54
44

Associated Gene:

Gene:
SPATA22
Ensembl Gene ID:
ENSAPLG00000004418
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004529
7825651 - 7830310
4660